The distribution and densities of three pelagic fish taxa (Nile Perch, Lates niloticus, Rastrineobola argentea [Dagaa], and the haplochromine cichlids) in Lake Victoria were estimated through 17 lake-wide acoustic surveys conducted in two series (August 1999–August 2002 and August 2005–September 2011). Nile Perch densities were estimated through echo-counting, while Dagaa and haplochromines by echo-integration. Mixed generalized linear model estimates indicated up to 30% decline in Nile Perch densities in the deep and coastal areas and up to 65% reduction in the shallow inshore areas over the study period. There was a twofold increase in Dagaa densities and a 10% increase in haplochromines. The distribution and densities of these species were influenced by season, stratum and year of survey. In addition to fish exhibiting seasonal clustering in the upper layers of the water column, they also appeared to spread to shallow inshore waters. The Nyanza, Speke, and Emin Pasha Gulfs demonstrated diverse spatial stock oscillations in abundance, and distribution which call for a need to include area disaggregated considerations in stochastic models when predicting dynamics of fish stocks.

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